2022

Peñalba, Joshua V., Jeffrey L. Peters, Leo Joseph (2022) “Sustained plumage divergence despite weak genomic differentiation and broad sympatry in sister species of Australian woodswallows (Artamus spp.)” Molecular Ecology [link]

Valeria Ramírez-Castañeda , Erin P. Westeen, Jeffrey Frederick, Sina Amini, Daniel R. Wait, Anang S. Achmadi, Noviar Andayani, Evy Arida, Umilaela Arifin, Moisés A. Bernal, Elisa Bonaccorso, Marites Bonachita Sanguila, Rafe M. Brown, Jing Che, F. Peter Condori, Diny Hartiningtias, Anna E. Hiller, Djoko T. Iskandar, Rosa Alicia Jiménez, Rassim Khelifa, Roberto Márquez, José G. Martínez-Fonseca, Juan L. Parra, Joshua V. Peñalba, Lina Pinto-García, Onja H. Razafindratsima, Santiago R. Ron, Sara Souza, Jatna Supriatna, Rauri C. K. Bowie, Carla Cicero, Jimmy A. McGuire, and Rebecca D. Tarvin (2022) “A set of principles and practical suggestions for equitable fieldwork in biology” PNAS 119 (34) e2122667119[link]

2021

McEntee, Jay P, Gleb Zhelezov, Chacha Werema, Nadje Najar, Joshua V Peñalba, Elia Mulungu, Maneno Mbilinyi, Sylvester Karimi, Lyubov Chumakova, J Gordon Burleigh, Rauri CK Bowie (2021) “Punctuated evolution in the learned songs of African sunbirds” Proceedings of the Royal Society B 288 (1963), 20212062 [link]

Metzler, Dirk, Ulrich Knief, Joshua V Peñalba, Jochen BW Wolf (2021) “Assortative mating and epistatic mating‐trait architecture induce complex movement of the crow hybrid zone” Evolution 75 (12), 3154-3174 [link][preprint]

Cockburn, Andrew, Joshua V Peñalba, Damian Jaccoud, Andrzej Kilian, Lyanne Brouwer, Michael C Double, Nicolas Margraf, Helen L Osmond, Loeske EB Kruuk, Martijn van de Pol (2020) “HIPHOP: Improved paternity assignment among close relatives using a simple exclusion method for biallelic markers” Molecular Ecology Resources 21 (6), 1850-1865 [link]

2020

Peñalba, Joshua V, Jochen J.B. Wolf (2020) “From molecules to populations: appreciating and estimating recombination rate variation” Nature Reviews Genetics 1-17 [link]

Peñalba, Joshua V, Yuan Deng, Qi Fang, Leo Joseph, Craig Moritz, Andrew Cockburn (2020) “Genome of an iconic Australian bird: Chromosome-scale assembly and linkage map of the superb fairy-wren (Malurus cyaneus)” Molecular Ecology Resources 20 (2), 560-578 [link] [preprint]

Keighley, Miles V, Naomi E Langmore, Joshua V Peñalba, Robert Heinsohn. (2020) “Modelling dispersal in a large parrot: a comparison of landscape resistance models with population genetics and vocal dialect patterns” Landscape Ecology 35, 129–144 [link]

2019

Peñalba, Joshua V, Leo Joseph, Craig Moritz. (2019) “Current geography masks dynamic history of gene flow during speciation in northern Australian birds” Molecular Ecology doi: 10.1111/mec.14978 [link] [preprint]

Keighley, Miles V, Robert Heinsohn, Naomi E Langmore, Stephen A Murphy, & Joshua V Peñalba (2019) “Genomic population structure aligns with vocal dialects in Palm Cockatoos (Probosciger aterrimus); evidence for refugial late-Quaternary distribution?” Emu – Austral Ornithology, 119(1), 24-37. [link]

2017

Peñalba, Joshua V, Ian J Mason, Richard Schodde, Craig Moritz, Leo Joseph. (2017) “Characterizing divergence through three adjacent Australian avian transition zones” Journal of Biogeography, 44 (10), 2247-2258 [link]

2016

McEntee, Jay P, Joshua V Peñalba, Chacha Werema, Elia Mulungu, Maneno Mbilinyi, David Moyer, Louis Hansen, Jon Fjeldså, Rauri CK Bowie. (2016) “Social selection parapatry in an Afrotropical sunbird” Evolution, 70 (6), 1307-1321 [link]

Voelker, Gary, Jerry W Huntley, Joshua V Peñalba, Rauri C.K. Bowie (2016) “Resolving taxonomic uncertainty and historical biogeographic patterns in Muscicapa flycatchers and their allies” Molecular Phylogenetics and Evolution, 94: 618-625 [link]

2015

Schweizer, Manuel, Timothy F Wright, Joshua V Peñalba, Erin E Schirtzinger, Leo Joseph. (2015) “Molecular phylogenetics suggests a New Guinean origin and frequent episodes of founder-event speciation in the nectarivorous lories and lorikeets (Aves: Psittaciformes)” Molecular Phylogenetics and Evolution. 90 : 34-48 [link]

2014

Peñalba, Joshua V, Lydia L Smith, Maria A Tonione, Chodon Sass, Sarah M Hykin, Phillip L Skipwith, Jimmy A McGuire, Rauri CK Bowie, and Craig Moritz. (2014) “Sequence capture using PCR‐generated probes: a cost‐effective method of targeted high‐throughput sequencing for nonmodel organisms.” Molecular Ecology Resources. 14(5), 1000-1010. [link]

Voelker, Gary, Joshua V Peñalba, Jerry W Huntley, and Rauri CK Bowie. (2014) “Diversification in an Afro-Asian songbird clade (Erythropygia–Copsychus) reveals founder-event speciation via trans-oceanic dispersals and a southern to northern colonization pattern in Africa.” Molecular Phylogenetics and Evolution. 73 : 97-105. [link]

Preprints