Publications

Preprints

Peñalba, Joshua V, Yuan Deng, Qi Fang, Leo Joseph, Craig Moritz, Andrew Cockburn (2019) “Genome of an iconic Australian bird: Chromosome-scale assembly and linkage map of the superb fairy-wren (Malurus cyaneus)” bioRxiv doi: 10.1101/742965 [preprint]

McEntee, Jay P., Gleb Zhelezov, Chacha Werema, Nadje Najar, Joshua V. Peñalba, Elia Mulungu, Maneno Mbilinyi, Sylvester Karimi, Lyubov Chumakova, J. Gordon Burleigh, Rauri C.K. Bowie (2019) “Inferring punctuated evolution in the learned songs of African sunbirds” bioRxiv doi: 10.1101/828459 [preprint]

2019

Peñalba, Joshua V, Leo Joseph, Craig Moritz. (2019) “Current geography masks dynamic history of gene flow during speciation in northern Australian birds” Molecular Ecology doi: 10.1111/mec.14978 [link] [preprint]

Keighley, Miles V, Robert Heinsohn, Naomi E Langmore, Stephen A Murphy, & Joshua V Peñalba (2019) “Genomic population structure aligns with vocal dialects in Palm Cockatoos (Probosciger aterrimus); evidence for refugial late-Quaternary distribution?” Emu – Austral Ornithology, 119(1), 24-37. [link]

2017

Peñalba, Joshua V, Ian J Mason, Richard Schodde, Craig Moritz, Leo Joseph. (2017) “Characterizing divergence through three adjacent Australian avian transition zones” Journal of Biogeography, 44 (10), 2247-2258 [link]

2016

McEntee, Jay P, Joshua V Peñalba, Chacha Werema, Elia Mulungu, Maneno Mbilinyi, David Moyer, Louis Hansen, Jon Fjeldså, Rauri CK Bowie. (2016) “Social selection parapatry in an Afrotropical sunbird” Evolution, 70 (6), 1307-1321 [link]

Voelker, Gary, Jerry W Huntley, Joshua V Peñalba, Rauri C.K. Bowie (2016) “Resolving taxonomic uncertainty and historical biogeographic patterns in Muscicapa flycatchers and their allies” Molecular Phylogenetics and Evolution, 94: 618-625 [link]

2015

Schweizer, Manuel, Timothy F Wright, Joshua V Peñalba, Erin E Schirtzinger, Leo Joseph. (2015) “Molecular phylogenetics suggests a New Guinean origin and frequent episodes of founder-event speciation in the nectarivorous lories and lorikeets (Aves: Psittaciformes)” Molecular Phylogenetics and Evolution. 90 : 34-48 [link]

2014

Peñalba, Joshua V, Lydia L Smith, Maria A Tonione, Chodon Sass, Sarah M Hykin, Phillip L Skipwith, Jimmy A McGuire, Rauri CK Bowie, and Craig Moritz. (2014) “Sequence capture using PCR‐generated probes: a cost‐effective method of targeted high‐throughput sequencing for nonmodel organisms.” Molecular Ecology Resources. 14(5), 1000-1010. [link]

Voelker, Gary, Joshua V Peñalba, Jerry W Huntley, and Rauri CK Bowie. (2014) “Diversification in an Afro-Asian songbird clade (ErythropygiaCopsychus) reveals founder-event speciation via trans-oceanic dispersals and a southern to northern colonization pattern in Africa.” Molecular Phylogenetics and Evolution. 73 : 97-105. [link]